One of the diagnostics checks performed by the CRM Environmental Diagnostics Wizard prior to installation is to confirm that the CRM web site has the NTAuthenticationProvider set to 'Negotiate,NTLM'. I've never entirely worked out why this is necessary, especially as I've subsequently changed the Authentication provider after installation with no adverse effects (* though see below), but that's not the point of this post.
The main point is that the NTAuthenticationProvider attribute can be viewed or set at several levels via the adsutil.vbs script. This is reasonably well documented in the Technet article referenced from the EDW help file. However, what is not made clear is that the attribute can be set at one of 3 levels. Each of the following commands does something slightly different:
cscript adsutil.vbs set w3svc/WebSite/root/NTAuthenticationProviders "Negotiate,NTLM"
cscript adsutil.vbs set w3svc/WebSite/NTAuthenticationProviders "Negotiate,NTLM"
cscript adsutil.vbs set w3svc/NTAuthenticationProviders "Negotiate,NTLM"
The third command is noticeably different, in that it sets the attribute at the server level, rather than the web site level. I can't see any particular reason for different behaviour between the first 2 commands, but it does affect the CRM EDW. As far as I can tell, you need to use the syntax in the second command to satisfy the EDW, whereas unfortunately the Technet article uses the syntax in the first command.
* Re what Authentication Provider to use. I've happily run a single server implementation of CRM using NTLM authentication, but I expect Kerberos may be necessary in a multi-server implementation